RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1, RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1
dbSNP IDss475877916
SNP Array ID
480K SNP array for apple:AX-115182435
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1
50K SNP array for apple:AX-105223174
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1.probe: AAAAAGAGATGGCAATCACCCCTGATCAGACTAGGAAAGTTGGGATGGGG
5' Flanking SequenceTAGGAAGAGTGAAAAAGAGATGGCAATCACCCCTGATCAGACTAGGAAAGTTGGGATGGG G
3' Flanking SequenceTGTCACCATCCCCATCTCCTTTTCTTACTCCTCGTCCCGAAAGGCGGCGCAAAACGCTTG A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple_HCGA_F14N/A21.27SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
2Apple_HC64_F14N/A26.85SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
3Apple_HCMO_F14N/A28.45SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
4Apple_HGMM_Consenus4N/A37.51SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
5Apple-RosBREED-3.9K-20194N/A26.4SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
6Apple-BB-F14N/A36.82SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
7Apple-NCZFBB-consensus4N/A40.02SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
8Apple-Honeycrisp_Consensus-F14N/A26.4RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
9Pear-PH-CG-2017LG12N/A104.91RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1View
Sequence
>RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1 ID=RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1; Name=RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TCACCCCTGATCAGACTAGGAAAGTTGGGATGGGG[C/T]TGTCACCATC
CCCATCTCCTTTTCTTACTCCTCGT
Alignments
Feature NameTypeLocationAnalysis
MDC007250.318 contig MDC007250.318:22589..22589. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr04 chromosome Chr04:20571661..20571661+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation