RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3, RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3
dbSNP IDss475879355
SNP Array ID
480K SNP array for apple:AX-115181934
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3
20K SNP array for apple:RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3.probe: TCGATTTCCATCACCTTGTTGCCCGAAGAAGGTAATACATCGCAACATTG
5' Flanking SequenceATTCTCTGATTTCGATTTCCATCACCTTGTTGCCCGAAGAAGGTAATACATCGCAACATT G
3' Flanking SequenceCTTCGTGGCGCCTGCAACTGATTAATTCACGAAAACATGGAATTAGTATTATATAAGTTT C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Libraries
Library NameType
20K SNP array for appleSNP_chip
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F19N/A25.1c475879355View
2Apple-Honeycrisp_Consensus-F19N/A15.12RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3View
Sequence
>RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3 ID=RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3; Name=RosBREEDSNP_SNP_TC_6817208_Lg9_00280_MAF50_1659011_exon3; organism=Malus x domestica; type=genetic_marker; length=75bp
TTGTTGCCCGAAGAAGGTAATACATCGCAACATTG[C/T]CTTCGTGGCG
CCTGCAACTGATTAATTCACGAAAA
Alignments
Feature NameTypeLocationAnalysis
MDC022150.281 contig MDC022150.281:4212..4212. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr09 chromosome Chr09:7622489..7622489+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation