RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3, RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3
50K SNP array for apple:	AX-105174743

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

AAAATTATTTTTGGAGGGTTTAGTTGTTGCAGCAA

3' Flanking Sequence

TCCAACACTAGCTTCAACAGACTCACCAGTTACT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-Honeycrisp_Consensus-F1	10	N/A	40.36	RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3	View

Sequence

>RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3 ID=RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3; Name=RosBREEDSNP_SNP_TC_2517805_Lg3_RosCOS1398_MAF50_1659656_exon3; organism=Malus x domestica; type=genetic_marker; length=70bp
AAAATTATTTTTGGAGGGTTTAGTTGTTGCAGCAAYTCCAACACTAGCTT
CAACAGACTCACCAGTTACT

Alignments

Feature Name	Type	Location	Analysis
MDC010788.104	contig	MDC010788.104:9633..9633.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10	chromosome	Chr10:25099611..25099611.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation