GDsnp01921, GDsnp01921 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp01921
dbSNP IDss475882690
SNP Array ID
IRSC 9K SNP array for apple:GDsnp01921
50K SNP array for apple:AX-105176255
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGACAATCATTACAAAGATTGCATGGAGACATGCTC
3' Flanking SequenceCAGTCTGGTGATCATGAACTTTCGGAGGAACTGC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map3N/A24.1GDsnp01921View
2Apple-M432-201311N/A17.8GDsnp01921View
3Apple-M432-2013-physical-Malus-domestica3N/A6580215GDsnp01921View
4Apple-Honeycrisp_Consensus-F13N/A8.79GDsnp01921View
5Apple-GDxBr-F1-2013LG3N/A24.61GD_SNP01921View
Sequence
>GDsnp01921 ID=GDsnp01921; Name=GDsnp01921; organism=Malus x domestica; type=genetic_marker; length=70bp
GACAATCATTACAAAGATTGCATGGAGACATGCTCRCAGTCTGGTGATCA
TGAACTTTCGGAGGAACTGC
Alignments
Feature NameTypeLocationAnalysis
MDC022028.272 contig MDC022028.272:4416..4416. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:5200077..5200177+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:5200129..5200129. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:5200127..5200127. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation