RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2, RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2
dbSNP IDss475881716
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2
50K SNP array for apple:AX-105205857
TypeSNP
SNP AllelesT/C
5' Flanking SequenceACTGGCAGTTCTCATTCAGCTATTCAACAGGTGAT
3' Flanking SequenceAACTCTTTAACCTCTGAGTTTGACATCAAGGACT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201316N/A15.87RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2View
2Apple-M432-2013-physical-Malus-domestica16N/A3066832RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2View
3Apple-NC-F116N/A25.39RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2View
4Apple-NCZFBB-consensus16N/A22.96RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2View
5Apple-ZF-F116N/A16.02RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2View
Sequence
>RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2 ID=RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2; Name=RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
ACTGGCAGTTCTCATTCAGCTATTCAACAGGTGATYAACTCTTTAACCTC
TGAGTTTGACATCAAGGACT
Alignments
Feature NameTypeLocationAnalysis
MDC027512.22 contig MDC027512.22:8145..8145. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16 chromosome Chr16:5077536..5077536. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation