RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3, RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3
Aliasss475877719
rs267610665
a475877719
SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3
AX-105207209
dbSNP IDss475877719
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3
50K SNP array for apple:RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCCGATACCATAGACATCACCAATCTTCACCATCTA
3' Flanking SequenceCGTTGCGGTCACCATCACCACATTTTCCACCCGA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3Malus x domesticamarker_locus
RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3-112.17Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3 ID=RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3|Name=RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3|organism=Malus x domestica|type=genetic_marker|length=70bp
CCGATACCATAGACATCACCAATCTTCACCATCTAMCGTTGCGGTCACCA
TCACCACATTTTCCACCCGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20133N/A46.9RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3View
2Apple-M432-2013-physical-Malus-domestica3N/A27149833RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3View
3Pear-PH-CG-2017LG3N/A112.17RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3View
Alignments
Feature NameTypeLocationAnalysis
MDC010547.169 contig MDC010547.169:6550..6550. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:26008387..26008387. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:26008386..26008386. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation