RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1, RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1
Aliasss475876421
rs267609368
c475876421
SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1
AX-105206015
dbSNP IDss475876421
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTTCCTCGGACATGCCGATCGAGTCTGTGGATCCC
3' Flanking SequenceTTGAGGATGCAGGGTTTCACATAGTGACAGAGAC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1-34.311Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1-110.62Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1 ID=RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1|Name=RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
TTTCCTCGGACATGCCGATCGAGTCTGTGGATCCCYTTGAGGATGCAGGG
TTTCACATAGTGACAGAGAC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A46.4RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1View
2Apple-M432-2013-physical-Malus-domestica13N/A27126226RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1View
3Apple-Honeycrisp_Consensus-F111N/A34.31RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1View
4Pear-PH-CG-2017LG15N/A110.62RosBREEDSNP_SNP_TC_27126226_Lg13_MDP0000716623_MAF50_MDP0000716623_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC007794.283 contig MDC007794.283:63598..63598. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:17769368..17769368. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:17769367..17769367. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation