RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2, RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2
Aliasss475877021
rs267609968
c475877021
SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2
AX-105185025
dbSNP IDss475877021
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2
50K SNP array for apple:RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAGGTCGAGTTGACTACTGCTCCTAGTGTGGACGAT
3' Flanking SequenceGCACTCACTGGGGCCAACAGGTTATTCTGCCAAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2 ID=RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2|Name=RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
AGGTCGAGTTGACTACTGCTCCTAGTGTGGACGATRGCACTCACTGGGGC
CAACAGGTTATTCTGCCAAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20132N/A9.06RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2View
2Apple-M432-2013-physical-Malus-domestica2N/A3425722RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2View
3Apple-BB-F12N/A8.25RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2View
4Apple-NCZFBB-consensus2N/A7.13RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2View
5Apple-ZF-F12N/A2.87RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC018668.121 contig MDC018668.121:6967..6967. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:2802489..2802489. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:2802488..2802488. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation