RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1, RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1
dbSNP IDss475881139
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1
50K SNP array for apple:AX-105189947
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGTTGTGGTGGTGCTGCTGACGGGTCTGCTGGATCC
3' Flanking SequenceTTGTTTTGCTTGGCGGAAATGGAGTTTGGGAAATG
SpeciesMalus x domestica
Publication[view all]
ContactNicola Harrison
Contact
NameDetails
Nicola Harrison
First name:Nicola
Last name:Harrison
Address:East Malling Research, New Road, East Malling, Kent ME19 6BJ, UK
Email:nicola.harrison@emr.ac.uk
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F111N/A6.7b475881139View
2Apple-M27xM116-2016LG11N/A7.1RBsnp1666View
3Apple-Honeycrisp_Consensus-F111N/A2.93RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1View
4Pear-PH-CG-2017LG11N/A79.36RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1View
Sequence
>RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1 ID=RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1; Name=RosBREEDSNP_SNP_AG_26943295_Lg14_02079_MAF50_160202_exon1; organism=Malus x domestica; type=genetic_marker; length=71bp
GTTGTGGTGGTGCTGCTGACGGGTCTGCTGGATCCRTTGTTTTGCTTGGC
GGAAATGGAGTTTGGGAAATG
Alignments
Feature NameTypeLocationAnalysis
MDC020499.182 contig MDC020499.182:3234..3234. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:1858042..1858042. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation