RosBREED_SNP_AC_2593090_Lg16, RosBREED_SNP_AC_2593090_Lg16 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREED_SNP_AC_2593090_Lg16
dbSNP IDss475883942
SNP Array ID
480K SNP array for apple:AX-115182140
IRSC 9K SNP array for apple:RosBREED_SNP_AC_2593090_Lg16
20K SNP array for apple:RosBREED_SNP_AC_2593090_Lg16
IRSCOA v1.0 SNP array for apple:AHKA3OQ
TypeSNP
SNP AllelesT/G
Probe 1RosBREED_SNP_AC_2593090_Lg16.probe: AACGAACACGATTCTCATGATCCACATAAAGAGGATCCGGAGAGCATCCG
5' Flanking SequenceTTCTTATTCAGCGCTCGTATAAAGCAGGAAAACATGTGCGAAGTCGTGGTTGGTGATATT TTTCAACTTATTGGGTGACTGGATGAAGTCGAGTAAAGAAAAACAAACATAAATCCAATA AAATGTATAGTTGCGGCAGTCTTTAAGGAAT
3' Flanking SequenceCGGATGCTCTCCGGATCCTCTTTATGTGGATCATGAGAATCGTGTTCGTTCATCGTATAT CGTGCGATCATAAATTATTTTAAATATTTTTATGTAAAATTAAACACAAACGGTATCTGA TAAAAACTATACGATGTACGATAAACGAACA
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
CommentPreviously given SSID ss475884124 is incorrect (Edge-Garza et al. TGG, 2021)
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREED_SNP_AC_2593090_Lg16 ID=RosBREED_SNP_AC_2593090_Lg16; Name=RosBREED_SNP_AC_2593090_Lg16; organism=Malus x domestica; type=genetic_marker; length=75bp
AATAAAATGTATAGTTGCGGCAGTCTTTAAGGAAT[A/C]CGGATGCTCT
CCGGATCCTCTTTATGTGGATCATG
Alignments
Feature NameTypeLocationAnalysis
MDC021902.108 contig MDC021902.108:210..210. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16 chromosome Chr16:4473190..4473190- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation