RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1, RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1
Aliasss475876281
rs267609229
b475876281
SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1
AX-105205887
dbSNP IDss475876281
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1
50K SNP array for apple:RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACCACATCAGGTTTAGGCCACAGCATGACGGAAAT
3' Flanking SequenceAGGTGGGGAGGGCTCTCAATTGAGCATCCATCTT
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1-146.71Malus x domesticamarker_locus
RosBREED_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1RosBREED_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1 ID=RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1|Name=RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
ACCACATCAGGTTTAGGCCACAGCATGACGGAAATRAGGTGGGGAGGGCT
CTCAATTGAGCATCCATCTT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A54.5RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1View
2Apple-M432-2013-physical-Malus-domestica11N/A26508753RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1View
3Pear-PH-CG-2017LG11N/A146.71RosBREEDSNP_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1View
4Pear-PM-F1-PEAR311N/A10.53RosBREED_SNP_GA_26508753_Lg11_138333_MAF40_138333_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC011766.689 contig MDC011766.689:7009..7009. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:31389873..31389873. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:31389872..31389872. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation