RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1, RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1

Type

SNP

SNP Alleles

T/C

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	17	N/A	59.66	RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	17	N/A	26169975	RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1	View

Alignments

Feature Name	Type	Location	Analysis
MDC018385.173	contig	MDC018385.173:5213..5213.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17	chromosome	Chr17:33577590..33577590.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation