RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2, RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2
Aliasss475877761
rs267610707
R_31098089_L3_PA
dbSNP IDss475877761
SNP Array ID
480K SNP array for apple:AX-105196555
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2
20K SNP array for apple:RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2.probe: TGGATAGAAGCACCACATATTTTTCCTGCTGTGCTAAAATGAATGTCAAA
5' Flanking SequenceACTTACATGTTTGGATAGAAGCACCACATATTTTTCCTGCTGTGCTAAAATGAATGTCAA A
3' Flanking SequenceAATTTCCCCTGAAGCAAAGTAGAAATCATGTTTAAAGTGCATATCCCTTGGACCACATTT A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2-55.06Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2 ID=RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2|Name=RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2|organism=Malus x domestica|type=genetic_marker|length=75bp
CATATTTTTCCTGCTGTGCTAAAATGAATGTCAAA[C/T]AATTTCCCCT
GAAGCAAAGTAGAAATCATGTTTAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20133N/A52.9RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2View
2Apple-M432-2013-physical-Malus-domestica3N/A31098089RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2View
3Apple-Honeycrisp_Consensus-F13N/A55.06RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2-55.06View
Alignments
Feature NameTypeLocationAnalysis
MDC012440.297 contig MDC012440.297:21534..21534. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:30349273..30349273+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218