GDsnp00264, GDsnp00264 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00264
dbSNP IDss475882774
SNP Array ID
480K SNP array for apple:AX-115195051
IRSC 9K SNP array for apple:GDsnp00264
50K SNP array for apple:AX-105210695
TypeSNP
SNP AllelesG/T
5' Flanking SequenceGCAGAATGATTGTGTTTGATGAATT
3' Flanking SequenceGTGGAATGACATGTATGGTATGCTG
SpeciesMalus x domestica
Publication[view all]
ContactCindy F. Verdu
Contact
NameDetails
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Libraries
Library NameType
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple_HCGA_F15N/A59.33GDsnp00264View
2Apple_HC64_F15N/A6.36GDsnp00264View
3Apple_HCMO_F15N/A15.37GDsnp00264View
4Apple_HGMM_Consenus5N/A28.03GDsnp00264View
5Apple Integrated map5N/A13.9GDsnp00264View
6Pear-PM-F1-PEAR35N/A5.95GDsnp00264View
7Apple-FjxPL-F1-2013LG5N/A14.78GDsnp00264View
8Apple-RosBREED-3.9K-20195N/A71.83GDsnp00264View
9Apple-NC-F15N/A106.02GDsnp00264View
10Apple-NCZFBB-consensus5N/A76.59GDsnp00264View
11Apple-ZF-F15N/A78.71GDsnp00264View
12Apple-X3259X3263-F15N/A8.74GD_SNP00264View
13Apple-Honeycrisp_Consensus-F15N/A9.08GDsnp00264View
14Pear-PH-CG-2017LG5N/A12.78GDsnp00264View
Sequence
>GDsnp00264 ID=GDsnp00264; Name=GDsnp00264; organism=Malus x domestica; type=genetic_marker; length=201bp
ACATATCGATCTCGGAATCAAGTTGGTGCTTCTCAATTTTTCATCTTGCC
ATATACCCTCGTTAAAATTGTCTTTGCAGAATGATTGTGTTTGATGAATT
KGTGGAATGACATGTATGGTATGCTGGTTGGTTTTGTGTTCGCGCTTTAG
ATTACAATTTATGAGATTGGGAATAGTTATTTAGCTTTTATACGGGATTT
G