RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1, RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1
Aliasss475883143
rs267616046
c475883143
SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1
AX-105214425
dbSNP IDss475883143
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATGTGATTTTCAGTTCAACAATCAGGTTATCTATC
3' Flanking SequenceCAGCAGGGTGGTTGCTGCTGTCTCCAGATCGGTC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1-58.582Malus x domesticamarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Mdo-HB-01-44Mdo-HB-01-44Malus x domesticahaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Mdo-HB-01-44_2Malus x domesticahaplotype
3Mdo-HB-01-44_3Malus x domesticahaplotype
4Mdo-HB-01-44_4Malus x domesticahaplotype
5Mdo-HB-01-44_5Malus x domesticahaplotype
6Mdo-HB-01-44_6Malus x domesticahaplotype
7Mdo-HB-01-44_7Malus x domesticahaplotype
8Mdo-HB-01-44_8Malus x domesticahaplotype
9Mdo-HB-01-44_9Malus x domesticahaplotype
10Mdo-HB-01-44_10Malus x domesticahaplotype
11Mdo-HB-01-44_11Malus x domesticahaplotype
12Mdo-HB-01-44_12Malus x domesticahaplotype
13Mdo-HB-01-44_13Malus x domesticahaplotype
14Mdo-HB-01-44_14Malus x domesticahaplotype
15Mdo-HB-01-44_15Malus x domesticahaplotype
16Mdo-HB-01-44_16Malus x domesticahaplotype
17Mdo-HB-01-44_17Malus x domesticahaplotype
18Mdo-HB-01-44_18Malus x domesticahaplotype
19Mdo-HB-01-44_19Malus x domesticahaplotype
20Mdo-HB-01-44_20Malus x domesticahaplotype
21Mdo-HB-01-44_21Malus x domesticahaplotype
22Mdo-HB-01-44_22Malus x domesticahaplotype
23Mdo-HB-01-44_23Malus x domesticahaplotype
24Mdo-HB-01-44_24Malus x domesticahaplotype
25Mdo-HB-01-44_25Malus x domesticahaplotype
26Mdo-HB-01-44_26Malus x domesticahaplotype
27Mdo-HB-01-44_27Malus x domesticahaplotype
28Mdo-HB-01-44_28Malus x domesticahaplotype
29Mdo-HB-01-44_29Malus x domesticahaplotype
30Mdo-HB-01-44_30Malus x domesticahaplotype
31Mdo-HB-01-44_31Malus x domesticahaplotype
32Mdo-HB-01-44_32Malus x domesticahaplotype
33Mdo-HB-01-44_33Malus x domesticahaplotype
34Mdo-HB-01-44_34Malus x domesticahaplotype
35Mdo-HB-01-44_35Malus x domesticahaplotype
36Mdo-HB-01-44_36Malus x domesticahaplotype
37Mdo-HB-01-44_37Malus x domesticahaplotype
38Mdo-HB-01-44_38Malus x domesticahaplotype
39Mdo-HB-01-44_39Malus x domesticahaplotype
40Mdo-HB-01-44_40Malus x domesticahaplotype
41Mdo-HB-01-44_41Malus x domesticahaplotype
42Mdo-HB-01-44_42Malus x domesticahaplotype
43Mdo-HB-01-44_43Malus x domesticahaplotype
44Mdo-HB-01-44_44Malus x domesticahaplotype
45Mdo-HB-01-44_45Malus x domesticahaplotype
46Mdo-HB-01-44_46Malus x domesticahaplotype
47Mdo-HB-01-44_47Malus x domesticahaplotype
48Mdo-HB-01-44_48Malus x domesticahaplotype
49Mdo-HB-01-44_49Malus x domesticahaplotype
50Mdo-HB-01-44_50Malus x domesticahaplotype
51Mdo-HB-01-44_51Malus x domesticahaplotype
52Mdo-HB-01-44_52Malus x domesticahaplotype
53Mdo-HB-01-44_53Malus x domesticahaplotype
54Mdo-HB-01-44_54Malus x domesticahaplotype
55Mdo-HB-01-44_55Malus x domesticahaplotype
56Mdo-HB-01-44_56Malus x domesticahaplotype
57Mdo-HB-01-44_57Malus x domesticahaplotype
58Mdo-HB-01-44_58Malus x domesticahaplotype
59Mdo-HB-01-44_59Malus x domesticahaplotype
60Mdo-HB-01-44_60Malus x domesticahaplotype
61Mdo-HB-01-44_61Malus x domesticahaplotype
62Mdo-HB-01-44_62Malus x domesticahaplotype
63Mdo-HB-01-44_63Malus x domesticahaplotype
64Mdo-HB-01-44_64Malus x domesticahaplotype
65Mdo-HB-01-44_65Malus x domesticahaplotype
66Mdo-HB-01-44_66Malus x domesticahaplotype
67Mdo-HB-01-44_67Malus x domesticahaplotype
68Mdo-HB-01-44_68Malus x domesticahaplotype
69Mdo-HB-01-44_69Malus x domesticahaplotype
70Mdo-HB-01-44_70Malus x domesticahaplotype
71Mdo-HB-01-44_71Malus x domesticahaplotype
72Mdo-HB-01-44_72Malus x domesticahaplotype
73Mdo-HB-01-44_73Malus x domesticahaplotype
74Mdo-HB-01-44_74Malus x domesticahaplotype
75Mdo-HB-01-44_75Malus x domesticahaplotype
76Mdo-HB-01-44_76Malus x domesticahaplotype
77Mdo-HB-01-44_77Malus x domesticahaplotype
78Mdo-HB-01-44_78Malus x domesticahaplotype
79Mdo-HB-01-44_79Malus x domesticahaplotype
80Mdo-HB-01-44_80Malus x domesticahaplotype
81Mdo-HB-01-44_81Malus x domesticahaplotype
82Mdo-HB-01-44_82Malus x domesticahaplotype
83Mdo-HB-01-44_83Malus x domesticahaplotype
84Mdo-HB-01-44_84Malus x domesticahaplotype
85Mdo-HB-01-44_85Malus x domesticahaplotype
86Mdo-HB-01-44_86Malus x domesticahaplotype
87Mdo-HB-01-44_87Malus x domesticahaplotype
88Mdo-HB-01-44_88Malus x domesticahaplotype
89Mdo-HB-01-44_89Malus x domesticahaplotype
90Mdo-HB-01-44_90Malus x domesticahaplotype
91Mdo-HB-01-44_91Malus x domesticahaplotype
92Mdo-HB-01-44_92Malus x domesticahaplotype
93Mdo-HB-01-44_93Malus x domesticahaplotype
94Mdo-HB-01-44_94Malus x domesticahaplotype
95Mdo-HB-01-44_95Malus x domesticahaplotype
96Mdo-HB-01-44_96Malus x domesticahaplotype
97Mdo-HB-01-44_97Malus x domesticahaplotype
98Mdo-HB-01-44_98Malus x domesticahaplotype
99Mdo-HB-01-44_99Malus x domesticahaplotype
100Mdo-HB-01-44_100Malus x domesticahaplotype
101Mdo-HB-01-44_101Malus x domesticahaplotype
102Mdo-HB-01-44_102Malus x domesticahaplotype
103Mdo-HB-01-44_103Malus x domesticahaplotype
104Mdo-HB-01-44_104Malus x domesticahaplotype
105Mdo-HB-01-44_105Malus x domesticahaplotype
106Mdo-HB-01-44_106Malus x domesticahaplotype
107Mdo-HB-01-44_107Malus x domesticahaplotype
108Mdo-HB-01-44_108Malus x domesticahaplotype
109Mdo-HB-01-44_109Malus x domesticahaplotype
110Mdo-HB-01-44_110Malus x domesticahaplotype
111Mdo-HB-01-44_111Malus x domesticahaplotype
112Mdo-HB-01-44_112Malus x domesticahaplotype
113Mdo-HB-01-44_113Malus x domesticahaplotype
114Mdo-HB-01-44_114Malus x domesticahaplotype
115Mdo-HB-01-44_115Malus x domesticahaplotype
116Mdo-HB-01-44_116Malus x domesticahaplotype
117Mdo-HB-01-44_117Malus x domesticahaplotype
118Mdo-HB-01-44_118Malus x domesticahaplotype
119Mdo-HB-01-44_119Malus x domesticahaplotype
120Mdo-HB-01-44_120Malus x domesticahaplotype
121Mdo-HB-01-44_121Malus x domesticahaplotype
122Mdo-HB-01-44_122Malus x domesticahaplotype
123Mdo-HB-01-44_123Malus x domesticahaplotype
124Mdo-HB-01-44_124Malus x domesticahaplotype
125Mdo-HB-01-44_125Malus x domesticahaplotype
126Mdo-HB-01-44_126Malus x domesticahaplotype
127Mdo-HB-01-44_127Malus x domesticahaplotype
128Mdo-HB-01-44_128Malus x domesticahaplotype
129Mdo-HB-01-44_129Malus x domesticahaplotype
130Mdo-HB-01-44_130Malus x domesticahaplotype
131Mdo-HB-01-44_131Malus x domesticahaplotype
132Mdo-HB-01-44_132Malus x domesticahaplotype
133Mdo-HB-01-44_133Malus x domesticahaplotype
134Mdo-HB-01-44_134Malus x domesticahaplotype
135Mdo-HB-01-44_135Malus x domesticahaplotype
136Mdo-HB-01-44_136Malus x domesticahaplotype
137Mdo-HB-01-44_137Malus x domesticahaplotype
138Mdo-HB-01-44_138Malus x domesticahaplotype
139Mdo-HB-01-44_139Malus x domesticahaplotype
140Mdo-HB-01-44_140Malus x domesticahaplotype
141Mdo-HB-01-44_141Malus x domesticahaplotype
142Mdo-HB-01-44_142Malus x domesticahaplotype
143Mdo-HB-01-44_143Malus x domesticahaplotype
144Mdo-HB-01-44_144Malus x domesticahaplotype
145Mdo-HB-01-44_145Malus x domesticahaplotype
146Mdo-HB-01-44_146Malus x domesticahaplotype
147Mdo-HB-01-44_147Malus x domesticahaplotype
148Mdo-HB-01-44_148Malus x domesticahaplotype
149Mdo-HB-01-44_149Malus x domesticahaplotype
150Mdo-HB-01-44_150Malus x domesticahaplotype
151Mdo-HB-01-44_151Malus x domesticahaplotype
152Mdo-HB-01-44_152Malus x domesticahaplotype
153Mdo-HB-01-44_153Malus x domesticahaplotype
154Mdo-HB-01-44_154Malus x domesticahaplotype
155Mdo-HB-01-44_155Malus x domesticahaplotype
156Mdo-HB-01-44_156Malus x domesticahaplotype
157Mdo-HB-01-44_157Malus x domesticahaplotype
158Mdo-HB-01-44_158Malus x domesticahaplotype
159Mdo-HB-01-44_159Malus x domesticahaplotype
160Mdo-HB-01-44_160Malus x domesticahaplotype
161Mdo-HB-01-44_161Malus x domesticahaplotype
162Mdo-HB-01-44_162Malus x domesticahaplotype
163Mdo-HB-01-44_163Malus x domesticahaplotype
164Mdo-HB-01-44_164Malus x domesticahaplotype
165Mdo-HB-01-44_165Malus x domesticahaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1 ID=RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1|Name=RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
ATGTGATTTTCAGTTCAACAATCAGGTTATCTATCYCAGCAGGGTGGTTG
CTGCTGTCTCCAGATCGGTC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A63.56RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1View
2Apple-M432-2013-physical-Malus-domestica8N/A30208839RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1View
3Apple-RosBREED-3.9K-20191N/A58.58RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1View
4Apple-Honeycrisp_Consensus-F11N/A58.58RosBREEDSNP_SNP_CT_30208839_Lg8_01764_MAF10_MDP0000273337_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC026280.28 contig MDC026280.28:19221..19221. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:25405194..25405194. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr08 chromosome Chr08:26623595..26623595. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation