RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1, RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1
dbSNP IDss475881721
SNP Array ID
480K SNP array for apple:AX-115182398
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1
50K SNP array for apple:AX-105183817
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1.probe: AACTCTCACTGCTGTAGGCCTTCTCTGTTCTCTATTGTTTTGCACTTTTT
5' Flanking SequenceGGGAAAGTAGTGACAATAAATGAAAACGTTTACGTTTGTTGGAAAATATAATTGGAACAA A
3' Flanking SequenceAAAAAGTGCAAAACAATAGAGAACAGAGAAGGCCTACAGCAGTGAGAGTTCTGTATAATT G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F116N/A15.2c475881721View
2Apple-RGTxGD-F1-2015RGT_16N/A12.69RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1View
3Apple-NC-F116N/A25.39RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1View
4Apple-NCZFBB-consensus16N/A22.96RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1View
5Apple-ZF-F116N/A16.02RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1View
Sequence
>RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1 ID=RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1; Name=RosBREEDSNP_SNP_CA_3097521_Lg16_01116_MAF50_724569_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
CGTTTACGTTTGTTGGAAAATATAATTGGAACAAA[A/C]AAAAAGTGCA
AAACAATAGAGAACAGAGAAGGCCT
Alignments
Feature NameTypeLocationAnalysis
MDC014221.230 contig MDC014221.230:5876..5876. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16 chromosome Chr16:5104265..5104265- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation