RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1, RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1
dbSNP IDss475882240
SNP Array ID
480K SNP array for apple:AX-105207571
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1
50K SNP array for apple:AX-105207571
TypeSNP
SNP AllelesA/C
Probe 1RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1.probe: TGTATCACGAACAAGAGTTCATTTATTTGGCTGGCTTAATGTATTTCCAC
5' Flanking SequenceTTGGTGAATCGTGTATCACGAACAAGAGTTCATTTATTTGGCTGGCTTAATGTATTTCCA C
3' Flanking SequenceACTAAAATGCTTAAAGTACAGAAATGGTAACATGCATAGGGAATGGATTTATGAATCATA C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-RGTxGD-F1-2015GD_17N/A84.82RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1View
2Apple-RosBREED-3.9K-201917N/A65.68RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1View
3Apple-Honeycrisp_Consensus-F117N/A65.68RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1View
Sequence
>RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1 ID=RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1; Name=RosBREEDSNP_SNP_CA_25607759_Lg17_00809_MAF50_221015_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AGTTCATTTATTTGGCTGGCTTAATGTATTTCCAC[A/C]ACTAAAATGC
TTAAAGTACAGAAATGGTAACATGC
Alignments
Feature NameTypeLocationAnalysis
MDC042579.5 contig MDC042579.5:11098..11098. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17 chromosome Chr17:32900869..32900869+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation