RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1, RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
Aliasss475883868
rs267616407
a475883868
SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
AX-105193113
dbSNP IDss475883868
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
TypeSNP
SNP AllelesY
5' Flanking SequenceGCGCCGAGGTACATCGAAAAGGCTCCGAAGATTGT
3' Flanking SequenceAACGTGAAAGTGAGTCCGAGGCCGATCCAGCAGCC
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1
Publication[view all]
Libraries
Library NameType
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
ss475883868ss475883868Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1-38.798Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1 ID=RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1|Name=RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
GCGCCGAGGTACATCGAAAAGGCTCCGAAGATTGT[C/T]AACGTGAAAG
TGAGTCCGAGGCCGATCCAGCAGCC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1apple-RosBREED-sweetness-2015LG1N/A59.8ss475883868View
2Apple-M432-20131N/A41RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1View
3Apple-M432-2013-physical-Malus-domestica1N/A26763910RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1View
4Apple-Honeycrisp_Consensus-F11N/A38.8RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC005900.194 contig MDC005900.194:10815..10815. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:26627399..26627399- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:26627400..26627400. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation