RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1, RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1
dbSNP IDss475880962
SNP Array ID
480K SNP array for apple:AX-105196925
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1
50K SNP array for apple:AX-105196925
TypeSNP
SNP AllelesM
5' Flanking SequenceGCAGTAGCTATGCCACTACTTTGGATTAATGACCA
3' Flanking SequenceGGCGAAGGGCATGAAGGTTATTATCTAGTTCCAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201312N/A0.12RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
2Apple-M432-2013-physical-Malus-domestica14N/A195425RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
3Apple-BB-F114N/A0RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
4Apple-NC-F114N/A0.09RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
5Apple-NCZFBB-consensus14N/A0.15RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
6Apple-ZF-F114N/A0.14RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
7Pear-PH-CG-2017LG14N/A1RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1View
Sequence
>RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1 ID=RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1; Name=RosBREEDSNP_SNP_CA_195425_Lg14_01888_MAF20_1660271_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GCAGTAGCTATGCCACTACTTTGGATTAATGACCA[A/C]GGCGAAGGGC
ATGAAGGTTATTATCTAGTTCCAAC
Alignments
Feature NameTypeLocationAnalysis
MDC018367.266 contig MDC018367.266:3118..3118. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:361071..361071+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation