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Marker Overview
| Name | RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2 |
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| dbSNP ID | ss475876325 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115181807 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2 | | 20K SNP array for apple: | RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2 | | 50K SNP array for apple: | AX-105206506 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| Probe 1 | RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2.probe: TATTATGATGATCGTGGCCCTCCATATTTCTAGACCCCATTTGATGAGTT |
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| 5' Flanking Sequence | ACTGTGCACCCTATTATGATGATCGTGGCCCTCCATATTTCTAGACCCCATTTGATGAGT
T |
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| 3' Flanking Sequence | CTCCAAGATTCAAATACACCAATCTAGAATCCAAGTTAAGATTCCCAATGTTGCTGCCAC
T |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2013 | Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407. |
| 2012 | Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Sequence
>RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2 ID=RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2; Name=RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp
GGCCCTCCATATTTCTAGACCCCATTTGATGAGTT[A/G]CTCCAAGATT
CAAATACACCAATCTAGAATCCAAG
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