RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1, RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1
Aliasss475876765
rs267609712
c475876765
SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1
AX-105212146
dbSNP IDss475876765
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTATTTTATTTCCTTGGTTTGGGTTGTAAGAAGTG
3' Flanking SequenceTACCATCTGGGGAGTGGGAGGGCAGGAACATGAT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1 ID=RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1|Name=RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
TTATTTTATTTCCTTGGTTTGGGTTGTAAGAAGTGYTACCATCTGGGGAG
TGGGAGGGCAGGAACATGAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201310N/A34.44RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A16605968RosBREEDSNP_SNP_TC_16605968_Lg1_02538_MAF20_1649659_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC013861.342 contig MDC013861.342:7068..7068. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:16057865..16057865. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:16057864..16057864. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation