RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1, RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1
Aliasss475877725
rs267610671
c475877725
SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1
AX-105179606
dbSNP IDss475877725
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCAATTACTCAAGCAGCATTAGTCTCCTGATATTGG
3' Flanking SequenceAGCAACAGCAACAGTAGCAAGCAAACAGAAATAT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1Malus x domesticamarker_locus
RosBREED_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1RosBREED_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1 ID=RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1|Name=RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
CAATTACTCAAGCAGCATTAGTCTCCTGATATTGGYAGCAACAGCAACAG
TAGCAAGCAAACAGAAATAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201310N/A93.09RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1View
2Apple-M432-2013-physical-Malus-domestica3N/A27687938RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1View
3Pear-PM-F1-Moonglow10N/A23.58RosBREED_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC000964.225 contig MDC000964.225:3637..3637. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr13 chromosome Chr13:5083927..5083927. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr13 chromosome Chr13:25718983..25718983. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation