GDsnp02437, GDsnp02437 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp02437
dbSNP IDss475882938
SNP Array ID
480K SNP array for apple:AX-105190658
IRSC 9K SNP array for apple:GDsnp02437
20K SNP array for apple:GDsnp02437
50K SNP array for apple:AX-105190658
TypeSNP
SNP AllelesT/G
Probe 1GDsnp02437.probe: AATAACATTTCACTGACCTATGGACTGGATGGCCGACTACTCAACCTCAA
5' Flanking SequenceCGACAATGTGCATCGGTTAACAGAGAACCACTATTTTTACCAGGAATCTGAATAACATTT CACTGACCTATGGACTGGATGGCCGACTACTCAACCTCAA
3' Flanking SequenceTAAGAATATGACTGATACTCGCAGTCAAAAACGGAAATTGTATGTTTTGGACAGAAATTG AGGTAACGGAAAGAATACTAAGATCCTGATCCAGGTAACA
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Cindy F. Verdu
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map9N/A54.2GDsnp02437View
2Apple_HCMO_F19N/A49.24GDsnp02437View
3Apple_HGMM_Consenus9N/A59.46GDsnp02437View
4Pear-PM-F1-Moonglow9N/A39.91GDsnp02437View
5Apple-FjxPL-F1-2013LG9N/A60.08GDsnp02437View
6Apple-RosBREED-3.9K-20199N/A50.11GDsnp02437View
7Apple-consensus-Allard-2016LG9N/A57.14GDsnp02437View
8Apple-Honeycrisp_Consensus-F19N/A50.11GDsnp02437View
9Pear-PH-CG-2017LG9N/A71.01GDsnp02437View
Sequence
>GDsnp02437 ID=GDsnp02437; Name=GDsnp02437; organism=Malus x domestica; type=genetic_marker; length=201bp
CGACAATGTGCATCGGTTAACAGAGAACCACTATTTTTACCAGGAATCTG
AATAACATTTCACTGACCTATGGACTGGATGGCCGACTACTCAACCTCAA
KTAAGAATATGACTGATACTCGCAGTCAAAAACGGAAATTGTATGTTTTG
GACAGAAATTGAGGTAACGGAAAGAATACTAAGATCCTGATCCAGGTAAC
A