RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1, RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1
dbSNP IDss475880165
SNP Array ID
480K SNP array for apple:AX-115182432
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1
50K SNP array for apple:AX-105211306
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1.probe: TGGAACATATTGCAAATGTATCTTGAGCCTGAATTGCTAGCCTCAACACC
5' Flanking SequenceTTCTAATCTTGGTTTCCCTAAGTTCAAGCTATGCTCAGCAGTTCTATGACCAATCTGATT G
3' Flanking SequenceGGTGTTGAGGCTAGCAATTCAGGCTCAAGATACATTTGCAATATGTTCCAAAATTCTTGC C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple_HCGA_F111N/A29.15SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
2Apple_HC64_F111N/A36.95SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
3Apple_HCMO_F111N/A50.04SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
4Apple_HGMM_Consenus11N/A54.54SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
5Apple-RosBREED-3.9K-201911N/A27.47SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
6Apple-BB-F111N/A29.9SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
7Apple-NC-F111N/A36.54SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
8Apple-NCZFBB-consensus11N/A28.4SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
9Apple-ZF-F111N/A31.58SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
10Apple-MM-F111N/A42.5a475880165View
11Apple-Honeycrisp_Consensus-F111N/A27.47RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1View
Sequence
>RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1 ID=RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1; Name=RosBREEDSNP_SNP_CT_12934511_Lg11_02465_MAF40_1664199_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AGCTATGCTCAGCAGTTCTATGACCAATCTGATTG[C/T]GGTGTTGAGG
CTAGCAATTCAGGCTCAAGATACAT
Alignments
Feature NameTypeLocationAnalysis
MDC042765.12 contig MDC042765.12:31826..31826. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:13039506..13039506- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr00 chromosome Chr00:50146456..50146456- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation