RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1, RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1
Aliasss475880525
rs267613470
a475880525
SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1
AX-105211459
dbSNP IDss475880525
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1
50K SNP array for apple:RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACAAACGTAAAGCAACTTGATGTTGAGCGTCTATC
3' Flanking SequenceTTTATTGAACCTGCCCAGTCTGCATCAGTATAAC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1 ID=RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1|Name=RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
ACAAACGTAAAGCAACTTGATGTTGAGCGTCTATCRTTTATTGAACCTGC
CCAGTCTGCATCAGTATAAC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20138N/A42.18RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1View
2Apple-M432-2013-physical-Malus-domestica12N/A28743645RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC036886.6 contig MDC036886.6:1111..1111. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr08 chromosome Chr08:19697942..19697942. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr08 chromosome Chr08:19697941..19697941. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation