RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1, RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
Aliasss475882950
rs267615890
b475882950
SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
R_29948697_L3_PA
dbSNP IDss475882950
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
20K SNP array for apple:RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
50K SNP array for apple:RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1.probe: GAAGGACTTGAATCCAACAGGTTAATTGTCACCATGAGGTGACCATTAAT
5' Flanking SequenceGTTACTCATGTGAAGGACTTGAATCCAACAGGTTAATTGTCACCATGAGGTGACCATTAA T
3' Flanking SequenceTAAGATTTATGTGTAAGACTCTCTCAACATGATCTTATATTAGTTGACGAAGCTTTCTGG T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1 ID=RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1|Name=RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
AACAGGTTAATTGTCACCATGAGGTGACCATTAAT[A/G]TAAGATTTAT
GTGTAAGACTCTCTCAACATGATCT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-2013-physical-Malus-domestica3N/A29948697RosBREEDSNP_SNP_GA_29948697_Lg3_01937_MAF20_767709_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC016527.225 contig MDC016527.225:9443..9443. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:29386213..29386213+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:29386214..29386214. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation