RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2, RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2
dbSNP IDss475883073
SNP Array ID
480K SNP array for apple:AX-115182385
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2
20K SNP array for apple:RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2
50K SNP array for apple:AX-105222594
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2.probe: TTGAAAATACGGTTTTTGTATGAAGTGTCATTAACACAAGTGTTGGATTT
5' Flanking SequenceATGATTTTGGAACACGACTTGTTATAGAAGTGTCGTATACAAGTAGTTGGATATTTGAAA A
3' Flanking SequenceAAATCCAACACTTGTGTTAATGACACTTCATACAAAAACCGTATTTTCAAAGTACTAAAA A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F12N/A5.2b475883073View
Sequence
>RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2 ID=RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2; Name=RosBREEDSNP_SNP_CA_1964290_Lg2_AAT1_MAF30_MDP0000307571_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp
GAAGTGTCGTATACAAGTAGTTGGATATTTGAAAA[A/C]AAATCCAACA
CTTGTGTTAATGACACTTCATACAA
Alignments
Feature NameTypeLocationAnalysis
MDC018196.110 contig MDC018196.110:15588..15588. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:916531..916531- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation