RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1, RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
Aliasss475880206
rs267613151
a475880206
SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
R_22731798_L11_PA
AX-105217328
dbSNP IDss475880206
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1.probe: TGAAAATTGTCCAGTGTGGATGATGGTACGCCTTCTTACTTTCAGTCGTC
5' Flanking SequenceGATTGTTGGCATGAAAATTGTCCAGTGTGGATGATGGTACGCCTTCTTACTTTCAGTCGT C
3' Flanking SequenceATTTGTGTCAACCTTCAATATTGCTTTGCGCTTCATCCTTGAAGGAATTGAGCTTCGAAT A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1-39.246Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1 ID=RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1|Name=RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
GTGGATGATGGTACGCCTTCTTACTTTCAGTCGTC[C/T]ATTTGTGTCA
ACCTTCAATATTGCTTTGCGCTTCA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A48.6RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1View
2Apple-M432-2013-physical-Malus-domestica11N/A22731798RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1View
3Apple-Honeycrisp_Consensus-F111N/A39.25RosBREEDSNP_SNP_CT_22731798_Lg11_00743_MAF10_MDP0000573656_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC007968.367 contig MDC007968.367:1467..1467. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:27288514..27288514- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:27288516..27288516. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation