GDsnp00094, GDsnp00094 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00094
dbSNP IDss475882820
SNP Array ID
480K SNP array for apple:AX-115181962
IRSC 9K SNP array for apple:GDsnp00094
20K SNP array for apple:GDsnp00094
50K SNP array for apple:AX-105176715
TypeSNP
SNP AllelesA/G
Probe 1GDsnp00094.probe: TTCTTGGAAGTCCTGGTGTTCAATCCCAGTCCAACATCTGCCTAGGTGCA
5' Flanking SequenceTCAAAACTAATAAAACCTTAGCTAATACTTTAAGCAAAGACCTAAATAAATCTTGTTACA CACAAAAACCATGTGTTATGGAGAAATTCGTTTTTGGGGA
3' Flanking SequenceTGCACCTAGGCAGATGTTGGACTGGGATTGAACACCAGGACTTCCAAGAAGCTCACTTAA CCTACCTCCACTCAGAATGTGGCATTTTTGGCCTCCAAAT
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map6N/A50.1GDsnp00094View
2Apple_HCGA_F16N/A10.6GDsnp00094View
3Apple_HC64_F16N/A13.73GDsnp00094View
4Apple_HCMO_F16N/A51.01GDsnp00094View
5Apple_HGMM_Consenus6N/A60.26GDsnp00094View
6Apple-RGTxGD-F1-2015GD_6N/A47.37GDsnp00094View
7Apple-RosBREED-3.9K-20196N/A43.25GDsnp00094View
8Apple-Honeycrisp_Consensus-F16N/A43.25GDsnp00094View
9Apple-GDxBr-F1-2013LG6N/A36.91GD_SNP00094View
Sequence
>GDsnp00094 ID=GDsnp00094; Name=GDsnp00094; organism=Malus x domestica; type=genetic_marker; length=75bp
AAACCATGTGTTATGGAGAAATTCGTTTTTGGGGA[C/T]TGCACCTAGG
CAGATGTTGGACTGGGATTGAACAC