RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1, RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
Aliasss475877168
rs267610115
c475877168
SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
R_11503103_L2_PA
dbSNP IDss475877168
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
20K SNP array for apple:RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1.probe: ATAGAGAGAGAGAGAGAGAGATTGCTTTGCTCAAACAATGCACGGACAAA
5' Flanking SequenceAAGATAGAGAGATAGAGAGAGAGAGAGAGAGATTGCTTTGCTCAAACAATGCACGGACAA A
3' Flanking SequenceCACACCGAAGCAGTGAGAGAGAGTAGAGAGAGTGAGTGGGAGTTTCCATCAGAGCTCTCC T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1-19.885Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1-162.07Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1 ID=RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1|Name=RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
GAGAGATTGCTTTGCTCAAACAATGCACGGACAAA[C/T]CACACCGAAG
CAGTGAGAGAGAGTAGAGAGAGTGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20132N/A26.9RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1View
2Apple-M432-2013-physical-Malus-domestica2N/A11503103RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1View
3Apple-Honeycrisp_Consensus-F12N/A19.89RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1View
4Pear-PH-CG-2017LG2N/A162.07RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC013171.310 contig MDC013171.310:6686..6686. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:10313783..10313783+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:10313784..10313784. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation