RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1, RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1
dbSNP IDss475877208
SNP Array ID
480K SNP array for apple:AX-105202408
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1
50K SNP array for apple:AX-105202408
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1.probe: TAGGATTTCCAAACTGCCCTGCAGAATTCAGGAGTGCAACTCCAACTACT
5' Flanking SequenceGGCCTCACTGTTAGGATTTCCAAACTGCCCTGCAGAATTCAGGAGTGCAACTCCAACTAC T
3' Flanking SequenceGCTCGGGCAACCCAGCAGCTGCAACCAAAGCAGTAAAACCTCCAAGACTGAATTTACGGT G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F12N/A39.7a475877208View
2Apple-Honeycrisp_Consensus-F12N/A23.38RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
3Apple-RosBREED-3.9K-20192N/A23.38RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
4Apple-BB-F12N/A34.33RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
5Apple-NC-F12N/A27.21RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
6Apple-NCZFBB-consensus2N/A29.2RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
7Apple-ZF-F12N/A20.7RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1View
Sequence
>RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1 ID=RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1; Name=RosBREEDSNP_SNP_CT_13676580_Lg2_00214_MAF30_356820_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GCCCTGCAGAATTCAGGAGTGCAACTCCAACTACT[C/T]GCTCGGGCAA
CCCAGCAGCTGCAACCAAAGCAGTA
Alignments
Feature NameTypeLocationAnalysis
MDC001638.433 contig MDC001638.433:9049..9049. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:11974266..11974266+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation