GDsnp01810, GDsnp01810 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp01810
Aliasss475882301
rs267615246
GD_01810_L10_PA
dbSNP IDss475882301
SNP Array ID
480K SNP array for apple:AX-105187803
IRSC 9K SNP array for apple:GDsnp01810
20K SNP array for apple:GDsnp01810
TypeSNP
SNP AllelesA/C
Probe 1GDsnp01810.probe: AATTTCTCAAGTGGCCAAGTGGCCTGTAGCCGCATCAAAATTCATTGACA
5' Flanking SequenceTAAAATCACAAAGCTTGAAGGAAATACGTTACGTCAAAATTAATGGGTCAAATTTCTCAA GTGGCCAAGTGGCCTGTAGCCGCATCAAAATTCATTGACA
3' Flanking SequenceGAAGTCGCATCAAAATTTAAAGGCACAAAGCCGCGTCAAAATTCAAATGGCACAAAGCCG CACCAAATTCCAAATGGCACAAAGCTACATCTAGAACTAC
SpeciesMalus x domestica
PolymorphismP_ GDsnp01810
Publication[view all]
ContactMichela Troggio
Cindy F. Verdu
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2011Micheletti D, Troggio M, Zharkikh A, Costa F, Malnoy M, Velasco R, Salvi S. Genetic diversity of the genus Malus and implications for linkage mapping with SNPs. Tree Genetics & Genomes. 2011; 7(4):857-868.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
GDsnp01810GDsnp01810Malus x domesticamarker_locus
GD_SNP01810GD_SNP01810Malus x domesticamarker_locus


The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeGDsnp01810.probeMalus x domesticaprobe


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>GDsnp01810 ID=GDsnp01810|Name=GDsnp01810|organism=Malus x domestica|type=genetic_marker|length=201bp
TAAAATCACAAAGCTTGAAGGAAATACGTTACGTCAAAATTAATGGGTCA
AATTTCTCAAGTGGCCAAGTGGCCTGTAGCCGCATCAAAATTCATTGACA
MGAAGTCGCATCAAAATTTAAAGGCACAAAGCCGCGTCAAAATTCAAATG
GCACAAAGCCGCACCAAATTCCAAATGGCACAAAGCTACATCTAGAACTA
C
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map10N/A11.4GDsnp01810View
2Apple-RGTxGD-F1-2015GD_10N/A8.75GDsnp01810View
3Apple-FjxPL-F1-2013LG10N/A3.09GDsnp01810View
4Apple-GB-F1LG_10N/A10.2GD_SNP01810View
5Apple-GDxBr-F1-2013LG10N/A10.21GD_SNP01810View
Alignments
Feature NameTypeLocationAnalysis
MDC007739.480 contig MDC007739.480:18021..18021. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:4884121..4884121+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com