|
Marker Overview
Name | RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2 |
dbSNP ID | ss475880647 |
SNP Array ID | 480K SNP array for apple: | AX-115182514 | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2 | 20K SNP array for apple: | RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2 |
|
Type | SNP |
SNP Alleles | A/G |
Probe 1 | RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2.probe: ACTTTCCCCACTCTGGCAATCAAAGTAGGATTTACTCCTTTGAGCTTTGC |
5' Flanking Sequence | CAGAAAATGTGCTGGAAGACTTAGTTTCTTCTTTTAAACATGTGAGGAATGAAATGAAGT
G |
3' Flanking Sequence | GCAAAGCTCAAAGGAGTAAATCCTACTTTGATTGCCAGAGTGGGGAAAGTACTGTTTCGC
A |
Species | Malus x domestica |
Publication | [view all] |
Contact | Michela Troggio
|
Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
Year | Publication |
2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
2013 | Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407. |
Sequence
>RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2 ID=RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2; Name=RosBREEDSNP_SNP_CT_35615663_Lg12_01855_MAF20_1653033_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp TCTTCTTTTAAACATGTGAGGAATGAAATGAAGTG[C/T]GCAAAGCTCA AAGGAGTAAATCCTACTTTGATTGC
|