GDsnp00185, GDsnp00185 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00185
dbSNP IDss475882342
SNP Array ID
IRSC 9K SNP array for apple:GDsnp00185
TypeSNP
SNP AllelesA/C
SpeciesMalus x domestica
Publication[view all]
ContactCindy F. Verdu
Contact
NameDetails
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map11N/A19.1GDsnp00185View
2Apple-M432-201311N/A22GDsnp00185View
3Apple-M432-2013-physical-Malus-domestica11N/A8448275GDsnp00185View
4Apple-B-F1-2014B11N/A12.5GDsnp00185View
5Apple-FjxPL-F1-2013LG11N/A43.27GDsnp00185View
6Apple-GDxBr-F1-2013LG11N/A33.63GD_SNP00185View
Sequence
>GDsnp00185 ID=GDsnp00185; Name=GDsnp00185; organism=Malus x domestica; type=genetic_marker; length=201bp
GCCGCCGTCTCCCCTCTCCGATCTCCACAACCTACACATACACACAAAAA
TTCNAACCCATCAAAAATCACACACATACACACAAATCTCTCTTTCTCTG
MAACCTATACATACACAAACAGTTGTATCTATAGATCTCGCTTACCCGGA
GGCGAATCGACAGAGGAGAGAACGCGATCGGAGAGTTCGATCGGAGGAAC
C
Alignments
Feature NameTypeLocationAnalysis
MDC004975.134 contig MDC004975.134:16924..16924. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:7655285..7655285. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation