RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3, RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3
Aliasss475876730
rs267609677
c475876730
SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3
AX-105187250
dbSNP IDss475876730
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3
50K SNP array for apple:RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAATGAGCTGAGAAAACTAAGTAATGCCTCTGATTC
3' Flanking SequenceGCATCAAAATCATCAGCAGATTTTGAGAAATCGT
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3Malus x domesticamarker_locus
RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3-60.95Malus x domesticamarker_locus
RosBREED_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3RosBREED_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3 ID=RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3|Name=RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3|organism=Malus x domestica|type=genetic_marker|length=70bp
AATGAGCTGAGAAAACTAAGTAATGCCTCTGATTCYGCATCAAAATCATC
AGCAGATTTTGAGAAATCGT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20137N/A32.38RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3View
2Apple-M432-2013-physical-Malus-domestica1N/A14006533RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3View
3Pear-PH-CG-2017LG7N/A60.95RosBREEDSNP_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3View
4Pear-PM-F1-Moonglow7N/A30.62RosBREED_SNP_TC_14006533_Lg1_01889_MAF20_MDP0000263325_exon3View
Alignments
Feature NameTypeLocationAnalysis
MDC016307.72 contig MDC016307.72:7547..7547. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:18229069..18229069. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:18229068..18229068. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation