MdCCD8b, MdCCD8b (genetic_marker) Malus x domestica

Marker Overview

Name

MdCCD8b

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	MdCCD8b
50K SNP array for apple:	AX-105174838

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

AAGTGCTTACTCATCAATCTATAGGAATCTTAATC

3' Flanking Sequence

TTAGGATGATATTCACCACCCTAAATAGAGGAAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>MdCCD8b ID=MdCCD8b; Name=MdCCD8b; organism=Malus x domestica; type=genetic_marker; length=70bp
AAGTGCTTACTCATCAATCTATAGGAATCTTAATCRTTAGGATGATATTC
ACCACCCTAAATAGAGGAAG

Alignments

Feature Name	Type	Location	Analysis
MDC006253.231	contig	MDC006253.231:2726..2726.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03	chromosome	Chr03:19438797..19438797.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr05	chromosome	Chr05:10768246..10768246.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15	chromosome	Chr15:9769055..9769055.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15	chromosome	Chr15:9769133..9769133.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation