RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2, RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2
Aliasss475876931
rs267609878
c475876931
SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2
AX-105187620
dbSNP IDss475876931
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2
50K SNP array for apple:RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCAATATGGTCATTGGGCTCCTATGTGTAATCGTCT
3' Flanking SequenceTCTCAGTTTGCTCAATCTCAAGCTTCTACTGCAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2 ID=RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2|Name=RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
CAATATGGTCATTGGGCTCCTATGTGTAATCGTCTYTCTCAGTTTGCTCA
ATCTCAAGCTTCTACTGCAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201310N/A46.58RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2View
2Apple-M432-2013-physical-Malus-domestica1N/A34251015RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC008854.273 contig MDC008854.273:5798..5798. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:23301401..23301401. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr10 chromosome Chr10:23301400..23301400. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation