RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2, RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2
Aliasss475877731
rs267610677
c475877731
SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2
AX-105189956
dbSNP IDss475877731
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2
50K SNP array for apple:RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2
TypeSNP
SNP AllelesT/G
5' Flanking SequenceACAACGAAGACGATGCCAAAGAAACAGTTGCAGAA
3' Flanking SequenceGAGAGAAGGCAGCGGAACACGAAGCCAAAGATGC
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2Malus x domesticamarker_locus
RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2-69.85Malus x domesticamarker_locus
RosBREED_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2RosBREED_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2Malus x domesticamarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Mdo-HB-03-36Mdo-HB-03-36Malus x domesticahaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Mdo-HB-03-36_2Malus x domesticahaplotype
3Mdo-HB-03-36_3Malus x domesticahaplotype
4Mdo-HB-03-36_4Malus x domesticahaplotype
5Mdo-HB-03-36_5Malus x domesticahaplotype
6Mdo-HB-03-36_6Malus x domesticahaplotype
7Mdo-HB-03-36_7Malus x domesticahaplotype
8Mdo-HB-03-36_8Malus x domesticahaplotype
9Mdo-HB-03-36_9Malus x domesticahaplotype
10Mdo-HB-03-36_10Malus x domesticahaplotype
11Mdo-HB-03-36_11Malus x domesticahaplotype
12Mdo-HB-03-36_12Malus x domesticahaplotype
13Mdo-HB-03-36_13Malus x domesticahaplotype
14Mdo-HB-03-36_14Malus x domesticahaplotype
15Mdo-HB-03-36_15Malus x domesticahaplotype
16Mdo-HB-03-36_16Malus x domesticahaplotype
17Mdo-HB-03-36_17Malus x domesticahaplotype
18Mdo-HB-03-36_18Malus x domesticahaplotype
19Mdo-HB-03-36_19Malus x domesticahaplotype
20Mdo-HB-03-36_20Malus x domesticahaplotype
21Mdo-HB-03-36_21Malus x domesticahaplotype
22Mdo-HB-03-36_22Malus x domesticahaplotype
23Mdo-HB-03-36_23Malus x domesticahaplotype
24Mdo-HB-03-36_24Malus x domesticahaplotype
25Mdo-HB-03-36_25Malus x domesticahaplotype
26Mdo-HB-03-36_26Malus x domesticahaplotype
27Mdo-HB-03-36_27Malus x domesticahaplotype
28Mdo-HB-03-36_28Malus x domesticahaplotype
29Mdo-HB-03-36_29Malus x domesticahaplotype
30Mdo-HB-03-36_30Malus x domesticahaplotype
31Mdo-HB-03-36_31Malus x domesticahaplotype
32Mdo-HB-03-36_32Malus x domesticahaplotype
33Mdo-HB-03-36_33Malus x domesticahaplotype
34Mdo-HB-03-36_34Malus x domesticahaplotype
35Mdo-HB-03-36_35Malus x domesticahaplotype
36Mdo-HB-03-36_36Malus x domesticahaplotype
37Mdo-HB-03-36_37Malus x domesticahaplotype
38Mdo-HB-03-36_38Malus x domesticahaplotype
39Mdo-HB-03-36_39Malus x domesticahaplotype
40Mdo-HB-03-36_40Malus x domesticahaplotype
41Mdo-HB-03-36_41Malus x domesticahaplotype
42Mdo-HB-03-36_42Malus x domesticahaplotype
43Mdo-HB-03-36_43Malus x domesticahaplotype
44Mdo-HB-03-36_44Malus x domesticahaplotype
45Mdo-HB-03-36_45Malus x domesticahaplotype
46Mdo-HB-03-36_46Malus x domesticahaplotype
47Mdo-HB-03-36_47Malus x domesticahaplotype
48Mdo-HB-03-36_48Malus x domesticahaplotype
49Mdo-HB-03-36_49Malus x domesticahaplotype
50Mdo-HB-03-36_50Malus x domesticahaplotype
51Mdo-HB-03-36_51Malus x domesticahaplotype
52Mdo-HB-03-36_52Malus x domesticahaplotype
53Mdo-HB-03-36_53Malus x domesticahaplotype
54Mdo-HB-03-36_54Malus x domesticahaplotype
55Mdo-HB-03-36_55Malus x domesticahaplotype
56Mdo-HB-03-36_56Malus x domesticahaplotype
57Mdo-HB-03-36_57Malus x domesticahaplotype
58Mdo-HB-03-36_58Malus x domesticahaplotype
59Mdo-HB-03-36_59Malus x domesticahaplotype
60Mdo-HB-03-36_60Malus x domesticahaplotype
61Mdo-HB-03-36_61Malus x domesticahaplotype
62Mdo-HB-03-36_62Malus x domesticahaplotype
63Mdo-HB-03-36_63Malus x domesticahaplotype
64Mdo-HB-03-36_64Malus x domesticahaplotype
65Mdo-HB-03-36_65Malus x domesticahaplotype
66Mdo-HB-03-36_66Malus x domesticahaplotype
67Mdo-HB-03-36_67Malus x domesticahaplotype
68Mdo-HB-03-36_68Malus x domesticahaplotype
69Mdo-HB-03-36_69Malus x domesticahaplotype
70Mdo-HB-03-36_70Malus x domesticahaplotype
71Mdo-HB-03-36_71Malus x domesticahaplotype
72Mdo-HB-03-36_72Malus x domesticahaplotype
73Mdo-HB-03-36_73Malus x domesticahaplotype
74Mdo-HB-03-36_74Malus x domesticahaplotype
75Mdo-HB-03-36_75Malus x domesticahaplotype
76Mdo-HB-03-36_76Malus x domesticahaplotype
77Mdo-HB-03-36_77Malus x domesticahaplotype
78Mdo-HB-03-36_78Malus x domesticahaplotype
79Mdo-HB-03-36_79Malus x domesticahaplotype
80Mdo-HB-03-36_80Malus x domesticahaplotype
81Mdo-HB-03-36_81Malus x domesticahaplotype
82Mdo-HB-03-36_82Malus x domesticahaplotype
83Mdo-HB-03-36_83Malus x domesticahaplotype
84Mdo-HB-03-36_84Malus x domesticahaplotype
85Mdo-HB-03-36_85Malus x domesticahaplotype
86Mdo-HB-03-36_86Malus x domesticahaplotype
87Mdo-HB-03-36_87Malus x domesticahaplotype
88Mdo-HB-03-36_88Malus x domesticahaplotype
89Mdo-HB-03-36_89Malus x domesticahaplotype
90Mdo-HB-03-36_90Malus x domesticahaplotype
91Mdo-HB-03-36_91Malus x domesticahaplotype
92Mdo-HB-03-36_92Malus x domesticahaplotype
93Mdo-HB-03-36_93Malus x domesticahaplotype
94Mdo-HB-03-36_94Malus x domesticahaplotype
95Mdo-HB-03-36_95Malus x domesticahaplotype
96Mdo-HB-03-36_96Malus x domesticahaplotype
97Mdo-HB-03-36_97Malus x domesticahaplotype
98Mdo-HB-03-36_98Malus x domesticahaplotype
99Mdo-HB-03-36_99Malus x domesticahaplotype
100Mdo-HB-03-36_100Malus x domesticahaplotype
101Mdo-HB-03-36_101Malus x domesticahaplotype
102Mdo-HB-03-36_102Malus x domesticahaplotype
103Mdo-HB-03-36_103Malus x domesticahaplotype
104Mdo-HB-03-36_104Malus x domesticahaplotype
105Mdo-HB-03-36_105Malus x domesticahaplotype
106Mdo-HB-03-36_106Malus x domesticahaplotype
107Mdo-HB-03-36_107Malus x domesticahaplotype
108Mdo-HB-03-36_108Malus x domesticahaplotype
109Mdo-HB-03-36_109Malus x domesticahaplotype
110Mdo-HB-03-36_110Malus x domesticahaplotype
111Mdo-HB-03-36_111Malus x domesticahaplotype
112Mdo-HB-03-36_112Malus x domesticahaplotype
113Mdo-HB-03-36_113Malus x domesticahaplotype
114Mdo-HB-03-36_114Malus x domesticahaplotype
115Mdo-HB-03-36_115Malus x domesticahaplotype
116Mdo-HB-03-36_116Malus x domesticahaplotype
117Mdo-HB-03-36_117Malus x domesticahaplotype
118Mdo-HB-03-36_118Malus x domesticahaplotype
119Mdo-HB-03-36_119Malus x domesticahaplotype
120Mdo-HB-03-36_120Malus x domesticahaplotype
121Mdo-HB-03-36_121Malus x domesticahaplotype
122Mdo-HB-03-36_122Malus x domesticahaplotype
123Mdo-HB-03-36_123Malus x domesticahaplotype
124Mdo-HB-03-36_124Malus x domesticahaplotype
125Mdo-HB-03-36_125Malus x domesticahaplotype
126Mdo-HB-03-36_126Malus x domesticahaplotype
127Mdo-HB-03-36_127Malus x domesticahaplotype
128Mdo-HB-03-36_128Malus x domesticahaplotype
129Mdo-HB-03-36_129Malus x domesticahaplotype
130Mdo-HB-03-36_130Malus x domesticahaplotype
131Mdo-HB-03-36_131Malus x domesticahaplotype
132Mdo-HB-03-36_132Malus x domesticahaplotype
133Mdo-HB-03-36_133Malus x domesticahaplotype
134Mdo-HB-03-36_134Malus x domesticahaplotype
135Mdo-HB-03-36_135Malus x domesticahaplotype
136Mdo-HB-03-36_136Malus x domesticahaplotype
137Mdo-HB-03-36_137Malus x domesticahaplotype
138Mdo-HB-03-36_138Malus x domesticahaplotype
139Mdo-HB-03-36_139Malus x domesticahaplotype
140Mdo-HB-03-36_140Malus x domesticahaplotype
141Mdo-HB-03-36_141Malus x domesticahaplotype
142Mdo-HB-03-36_142Malus x domesticahaplotype
143Mdo-HB-03-36_143Malus x domesticahaplotype
144Mdo-HB-03-36_144Malus x domesticahaplotype
145Mdo-HB-03-36_145Malus x domesticahaplotype
146Mdo-HB-03-36_146Malus x domesticahaplotype
147Mdo-HB-03-36_147Malus x domesticahaplotype
148Mdo-HB-03-36_148Malus x domesticahaplotype
149Mdo-HB-03-36_149Malus x domesticahaplotype
150Mdo-HB-03-36_150Malus x domesticahaplotype
151Mdo-HB-03-36_151Malus x domesticahaplotype
152Mdo-HB-03-36_152Malus x domesticahaplotype
153Mdo-HB-03-36_153Malus x domesticahaplotype
154Mdo-HB-03-36_154Malus x domesticahaplotype
155Mdo-HB-03-36_155Malus x domesticahaplotype
156Mdo-HB-03-36_156Malus x domesticahaplotype
157Mdo-HB-03-36_157Malus x domesticahaplotype
158Mdo-HB-03-36_158Malus x domesticahaplotype
159Mdo-HB-03-36_159Malus x domesticahaplotype
160Mdo-HB-03-36_160Malus x domesticahaplotype
161Mdo-HB-03-36_161Malus x domesticahaplotype
162Mdo-HB-03-36_162Malus x domesticahaplotype
163Mdo-HB-03-36_163Malus x domesticahaplotype
164Mdo-HB-03-36_164Malus x domesticahaplotype
165Mdo-HB-03-36_165Malus x domesticahaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2 ID=RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2|Name=RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
ACAACGAAGACGATGCCAAAGAAACAGTTGCAGAAKGAGAGAAGGCAGCG
GAACACGAAGCCAAAGATGC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20133N/A48.3RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2View
2Apple-M432-2013-physical-Malus-domestica3N/A29342518RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2View
3Apple-RosBREED-3.9K-20193N/A49.42RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2View
4Pear-PH-CG-2017LG1N/A69.85RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2View
5Pear-PM-F1-Moonglow1N/A60.65RosBREED_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC007487.196 contig MDC007487.196:3601..3601. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16 chromosome Chr16:20532665..20532665. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:28789701..28789701. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation