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Marker Overview
| Name | RosBREED_SNP_GT_14945861_Lg5 |
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| dbSNP ID | ss475884044 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115182145 | | IRSC 9K SNP array for apple: | RosBREED_SNP_GT_14945861_Lg5 | | 20K SNP array for apple: | RosBREED_SNP_GT_14945861_Lg5 |
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| Type | SNP |
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| SNP Alleles | A/C |
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| Probe 1 | RosBREED_SNP_GT_14945861_Lg5.probe: CCACATGTCATCTATTATGCTTCCCGGACCTTGAATGATGCTTAATTAAA |
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| 5' Flanking Sequence | AAATAAGCCTTGGTTTGGCTTCTTTCTTTGTGAGCAAATACTTTAAAGCTGCATGATCAG
TGTAAACAATGACTTTAATGACAATTAAATAAGAATGAAATTTATCTAATGCAAACACAA
CAACAAGGAGTTCTTTTTCAGTGGTGGAGTA |
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| 3' Flanking Sequence | TTTAATTAAGCATCATTCAAGGTCCGGGAAGCATAATAGATGACATGTGGCTGCTTGTTC
TTCCTTTTGCCAAAAATAGCTCTAATTGCATAATCTGAGGCATCACACATGAGCTCATAA
GGAAGACTCCAATCTGGTGGAATTATGATAG |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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| Comment | Previously given SSID ss475884124 is incorrect (Edge-Garza et al. TGG, 2021) |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2021 | Edge-Garza DA, Villamil-Castro M, Main D, Hardner C. Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array. 2021 Tree Genetics & Genomes 17:17 |
| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Apple-MM-F1 | 5 | N/A | 53.3 | a475884044 | View |
Sequence
>RosBREED_SNP_GT_14945861_Lg5 ID=RosBREED_SNP_GT_14945861_Lg5; Name=RosBREED_SNP_GT_14945861_Lg5; organism=Malus x domestica; type=genetic_marker; length=75bp
ACAACAACAAGGAGTTCTTTTTCAGTGGTGGAGTA[G/T]TTTAATTAAG
CATCATTCAAGGTCCGGGAAGCATA
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