RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1, RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1
dbSNP IDss475876652
SNP Array ID
480K SNP array for apple:AX-115183017
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1
50K SNP array for apple:AX-105205965
TypeSNP
SNP AllelesA/C
Probe 1RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1.probe: ACTGTGAGCGGTTAAGCTAATTTGGCATGCTCACTTGAATTGAGTATGCA
5' Flanking SequenceTGAAAGGGATTACTGTGAGCGGTTAAGCTAATTTGGCATGCTCACTTGAATTGAGTATGC A
3' Flanking SequenceAATTTCCACTTGAATTAAGATTTCAGTTTGCTTGGTCGATAAAGTTAAAAGTGAAGTAAA A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
MDC012938.449contigMDC012938.449:12523..12523 .Malus x domestica Whole Genome v1.0 Assembly & Annotationn/a
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F11N/A0.6c475876652View
2Apple-Honeycrisp_Consensus-F11N/A0RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1View
3Apple-RosBREED-3.9K-20191N/A0RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1View
4Pear-PH-CG-2017LG1N/A89.78RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1View
Sequence
>RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1 ID=RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1; Name=RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
GCTAATTTGGCATGCTCACTTGAATTGAGTATGCA[A/C]AATTTCCACT
TGAATTAAGATTTCAGTTTGCTTGG