RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1, RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1
Aliasss475880291
rs267613236
a475880291
SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1
AX-105209598
dbSNP IDss475880291
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1
50K SNP array for apple:RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1
TypeSNP
SNP AllelesT/G
5' Flanking SequenceGAGAGACATGGTGAACTCTGCTGCTGTAGCTTTTC
3' Flanking SequenceGGGTTACTCAGTGAAATGGGTGTGTGTGTAGAGGA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1 ID=RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1|Name=RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1|organism=Malus x domestica|type=genetic_marker|length=71bp
GAGAGACATGGTGAACTCTGCTGCTGTAGCTTTTCKGGGTTACTCAGTGA
AATGGGTGTGTGTGTAGAGGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A62.4RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
2Apple-M432-2013-physical-Malus-domestica11N/A34226486RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
3Apple-BB-F111N/A53.15RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
4Apple-NC-F111N/A75.86RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
5Apple-NCZFBB-consensus11N/A56.98RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
6Apple-ZF-F111N/A77.17RosBREEDSNP_SNP_GT_34226486_Lg11_02910_MAF20_1656183_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC009360.302 contig MDC009360.302:4221..4221. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:37646272..37646272. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:37646271..37646271. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation