RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2, RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
Aliasss475875774
rs267608725
b475875774
SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
R_31736133_L1_PA
dbSNP IDss475875774
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
20K SNP array for apple:RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
50K SNP array for apple:RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2.probe: GAACCCATTTTAACACGTGCCTCAATCTAATATCTACCGTAACTTCCTAC
5' Flanking SequenceGACACGCACGTGAACCCATTTTAACACGTGCCTCAATCTAATATCTACCGTAACTTCCTA C
3' Flanking SequenceAATAATCGCTCACTCGGCTGAAGCCGCAAGTCGGTCTCATCCTCCTCTACGCCGTCGGCG C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2Malus x domesticamarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Mdo-HB-01-37Mdo-HB-01-37Malus x domesticahaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Mdo-HB-01-37_2Malus x domesticahaplotype
3Mdo-HB-01-37_3Malus x domesticahaplotype
4Mdo-HB-01-37_4Malus x domesticahaplotype
5Mdo-HB-01-37_5Malus x domesticahaplotype
6Mdo-HB-01-37_6Malus x domesticahaplotype
7Mdo-HB-01-37_7Malus x domesticahaplotype
8Mdo-HB-01-37_8Malus x domesticahaplotype
9Mdo-HB-01-37_9Malus x domesticahaplotype
10Mdo-HB-01-37_10Malus x domesticahaplotype
11Mdo-HB-01-37_11Malus x domesticahaplotype
12Mdo-HB-01-37_12Malus x domesticahaplotype
13Mdo-HB-01-37_13Malus x domesticahaplotype
14Mdo-HB-01-37_14Malus x domesticahaplotype
15Mdo-HB-01-37_15Malus x domesticahaplotype
16Mdo-HB-01-37_16Malus x domesticahaplotype
17Mdo-HB-01-37_17Malus x domesticahaplotype
18Mdo-HB-01-37_18Malus x domesticahaplotype
19Mdo-HB-01-37_19Malus x domesticahaplotype
20Mdo-HB-01-37_20Malus x domesticahaplotype
21Mdo-HB-01-37_21Malus x domesticahaplotype
22Mdo-HB-01-37_22Malus x domesticahaplotype
23Mdo-HB-01-37_23Malus x domesticahaplotype
24Mdo-HB-01-37_24Malus x domesticahaplotype
25Mdo-HB-01-37_25Malus x domesticahaplotype
26Mdo-HB-01-37_26Malus x domesticahaplotype
27Mdo-HB-01-37_27Malus x domesticahaplotype
28Mdo-HB-01-37_28Malus x domesticahaplotype
29Mdo-HB-01-37_29Malus x domesticahaplotype
30Mdo-HB-01-37_30Malus x domesticahaplotype
31Mdo-HB-01-37_31Malus x domesticahaplotype
32Mdo-HB-01-37_32Malus x domesticahaplotype
33Mdo-HB-01-37_33Malus x domesticahaplotype
34Mdo-HB-01-37_34Malus x domesticahaplotype
35Mdo-HB-01-37_35Malus x domesticahaplotype
36Mdo-HB-01-37_36Malus x domesticahaplotype
37Mdo-HB-01-37_37Malus x domesticahaplotype
38Mdo-HB-01-37_38Malus x domesticahaplotype
39Mdo-HB-01-37_39Malus x domesticahaplotype
40Mdo-HB-01-37_40Malus x domesticahaplotype
41Mdo-HB-01-37_41Malus x domesticahaplotype
42Mdo-HB-01-37_42Malus x domesticahaplotype
43Mdo-HB-01-37_43Malus x domesticahaplotype
44Mdo-HB-01-37_44Malus x domesticahaplotype
45Mdo-HB-01-37_45Malus x domesticahaplotype
46Mdo-HB-01-37_46Malus x domesticahaplotype
47Mdo-HB-01-37_47Malus x domesticahaplotype
48Mdo-HB-01-37_48Malus x domesticahaplotype
49Mdo-HB-01-37_49Malus x domesticahaplotype
50Mdo-HB-01-37_50Malus x domesticahaplotype
51Mdo-HB-01-37_51Malus x domesticahaplotype
52Mdo-HB-01-37_52Malus x domesticahaplotype
53Mdo-HB-01-37_53Malus x domesticahaplotype
54Mdo-HB-01-37_54Malus x domesticahaplotype
55Mdo-HB-01-37_55Malus x domesticahaplotype
56Mdo-HB-01-37_56Malus x domesticahaplotype
57Mdo-HB-01-37_57Malus x domesticahaplotype
58Mdo-HB-01-37_58Malus x domesticahaplotype
59Mdo-HB-01-37_59Malus x domesticahaplotype
60Mdo-HB-01-37_60Malus x domesticahaplotype
61Mdo-HB-01-37_61Malus x domesticahaplotype
62Mdo-HB-01-37_62Malus x domesticahaplotype
63Mdo-HB-01-37_63Malus x domesticahaplotype
64Mdo-HB-01-37_64Malus x domesticahaplotype
65Mdo-HB-01-37_65Malus x domesticahaplotype
66Mdo-HB-01-37_66Malus x domesticahaplotype
67Mdo-HB-01-37_67Malus x domesticahaplotype
68Mdo-HB-01-37_68Malus x domesticahaplotype
69Mdo-HB-01-37_69Malus x domesticahaplotype
70Mdo-HB-01-37_70Malus x domesticahaplotype
71Mdo-HB-01-37_71Malus x domesticahaplotype
72Mdo-HB-01-37_72Malus x domesticahaplotype
73Mdo-HB-01-37_73Malus x domesticahaplotype
74Mdo-HB-01-37_74Malus x domesticahaplotype
75Mdo-HB-01-37_75Malus x domesticahaplotype
76Mdo-HB-01-37_76Malus x domesticahaplotype
77Mdo-HB-01-37_77Malus x domesticahaplotype
78Mdo-HB-01-37_78Malus x domesticahaplotype
79Mdo-HB-01-37_79Malus x domesticahaplotype
80Mdo-HB-01-37_80Malus x domesticahaplotype
81Mdo-HB-01-37_81Malus x domesticahaplotype
82Mdo-HB-01-37_82Malus x domesticahaplotype
83Mdo-HB-01-37_83Malus x domesticahaplotype
84Mdo-HB-01-37_84Malus x domesticahaplotype
85Mdo-HB-01-37_85Malus x domesticahaplotype
86Mdo-HB-01-37_86Malus x domesticahaplotype
87Mdo-HB-01-37_87Malus x domesticahaplotype
88Mdo-HB-01-37_88Malus x domesticahaplotype
89Mdo-HB-01-37_89Malus x domesticahaplotype
90Mdo-HB-01-37_90Malus x domesticahaplotype
91Mdo-HB-01-37_91Malus x domesticahaplotype
92Mdo-HB-01-37_92Malus x domesticahaplotype
93Mdo-HB-01-37_93Malus x domesticahaplotype
94Mdo-HB-01-37_94Malus x domesticahaplotype
95Mdo-HB-01-37_95Malus x domesticahaplotype
96Mdo-HB-01-37_96Malus x domesticahaplotype
97Mdo-HB-01-37_97Malus x domesticahaplotype
98Mdo-HB-01-37_98Malus x domesticahaplotype
99Mdo-HB-01-37_99Malus x domesticahaplotype
100Mdo-HB-01-37_100Malus x domesticahaplotype
101Mdo-HB-01-37_101Malus x domesticahaplotype
102Mdo-HB-01-37_102Malus x domesticahaplotype
103Mdo-HB-01-37_103Malus x domesticahaplotype
104Mdo-HB-01-37_104Malus x domesticahaplotype
105Mdo-HB-01-37_105Malus x domesticahaplotype
106Mdo-HB-01-37_106Malus x domesticahaplotype
107Mdo-HB-01-37_107Malus x domesticahaplotype
108Mdo-HB-01-37_108Malus x domesticahaplotype
109Mdo-HB-01-37_109Malus x domesticahaplotype
110Mdo-HB-01-37_110Malus x domesticahaplotype
111Mdo-HB-01-37_111Malus x domesticahaplotype
112Mdo-HB-01-37_112Malus x domesticahaplotype
113Mdo-HB-01-37_113Malus x domesticahaplotype
114Mdo-HB-01-37_114Malus x domesticahaplotype
115Mdo-HB-01-37_115Malus x domesticahaplotype
116Mdo-HB-01-37_116Malus x domesticahaplotype
117Mdo-HB-01-37_117Malus x domesticahaplotype
118Mdo-HB-01-37_118Malus x domesticahaplotype
119Mdo-HB-01-37_119Malus x domesticahaplotype
120Mdo-HB-01-37_120Malus x domesticahaplotype
121Mdo-HB-01-37_121Malus x domesticahaplotype
122Mdo-HB-01-37_122Malus x domesticahaplotype
123Mdo-HB-01-37_123Malus x domesticahaplotype
124Mdo-HB-01-37_124Malus x domesticahaplotype
125Mdo-HB-01-37_125Malus x domesticahaplotype
126Mdo-HB-01-37_126Malus x domesticahaplotype
127Mdo-HB-01-37_127Malus x domesticahaplotype
128Mdo-HB-01-37_128Malus x domesticahaplotype
129Mdo-HB-01-37_129Malus x domesticahaplotype
130Mdo-HB-01-37_130Malus x domesticahaplotype
131Mdo-HB-01-37_131Malus x domesticahaplotype
132Mdo-HB-01-37_132Malus x domesticahaplotype
133Mdo-HB-01-37_133Malus x domesticahaplotype
134Mdo-HB-01-37_134Malus x domesticahaplotype
135Mdo-HB-01-37_135Malus x domesticahaplotype
136Mdo-HB-01-37_136Malus x domesticahaplotype
137Mdo-HB-01-37_137Malus x domesticahaplotype
138Mdo-HB-01-37_138Malus x domesticahaplotype
139Mdo-HB-01-37_139Malus x domesticahaplotype
140Mdo-HB-01-37_140Malus x domesticahaplotype
141Mdo-HB-01-37_141Malus x domesticahaplotype
142Mdo-HB-01-37_142Malus x domesticahaplotype
143Mdo-HB-01-37_143Malus x domesticahaplotype
144Mdo-HB-01-37_144Malus x domesticahaplotype
145Mdo-HB-01-37_145Malus x domesticahaplotype
146Mdo-HB-01-37_146Malus x domesticahaplotype
147Mdo-HB-01-37_147Malus x domesticahaplotype
148Mdo-HB-01-37_148Malus x domesticahaplotype
149Mdo-HB-01-37_149Malus x domesticahaplotype
150Mdo-HB-01-37_150Malus x domesticahaplotype
151Mdo-HB-01-37_151Malus x domesticahaplotype
152Mdo-HB-01-37_152Malus x domesticahaplotype
153Mdo-HB-01-37_153Malus x domesticahaplotype
154Mdo-HB-01-37_154Malus x domesticahaplotype
155Mdo-HB-01-37_155Malus x domesticahaplotype
156Mdo-HB-01-37_156Malus x domesticahaplotype
157Mdo-HB-01-37_157Malus x domesticahaplotype
158Mdo-HB-01-37_158Malus x domesticahaplotype
159Mdo-HB-01-37_159Malus x domesticahaplotype
160Mdo-HB-01-37_160Malus x domesticahaplotype
161Mdo-HB-01-37_161Malus x domesticahaplotype
162Mdo-HB-01-37_162Malus x domesticahaplotype
163Mdo-HB-01-37_163Malus x domesticahaplotype
164Mdo-HB-01-37_164Malus x domesticahaplotype
165Mdo-HB-01-37_165Malus x domesticahaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2 ID=RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2|Name=RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2|organism=Malus x domestica|type=genetic_marker|length=75bp
CGTGCCTCAATCTAATATCTACCGTAACTTCCTAC[C/T]AATAATCGCT
CACTCGGCTGAAGCCGCAAGTCGGT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A54.48RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2View
2Apple-M432-2013-physical-Malus-domestica1N/A31736133RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2View
3Apple-RosBREED-3.9K-20191N/A47.11RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC014218.219 contig MDC014218.219:8389..8389. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:29635265..29635265+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:29635266..29635266. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation