RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1, RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1
dbSNP IDss475877493
SNP Array ID
480K SNP array for apple:AX-115182444
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1
50K SNP array for apple:AX-105223423
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1.probe: CTCACATATGCATTGATCAACATATGTTAGAAAAATCGAACACCACCTGA
5' Flanking SequenceGATTAGTAACACTGCCAAAACATATTTGTAATACAATTGAGCACTATAAGGAGGCATTTT T
3' Flanking SequenceTCAGGTGGTGTTCGATTTTTCTAACATATGTTGATCAATGCATATGTGAGCCAAACGGTA T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F13N/A3.1b475877493View
Sequence
>RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1 ID=RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1; Name=RosBREEDSNP_SNP_CT_1625242_Lg3_EH034548_MAF20_1688644_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TGTAATACAATTGAGCACTATAAGGAGGCATTTTT[C/T]TCAGGTGGTG
TTCGATTTTTCTAACATATGTTGAT
Alignments
Feature NameTypeLocationAnalysis
MDC021624.87 contig MDC021624.87:1044..1044. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:1087058..1087058- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:1053004..1053004- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:1010143..1010143- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:981216..981216- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation