RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4, RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4
dbSNP IDss475880332
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4
50K SNP array for apple:AX-105189386
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGCAGCTCACCTCCCCATTAGGGAAATTTTAGAGAA
3' Flanking SequenceGAGAAAAAGGTTGGTTTGCTGGACAGTGTAACAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A81.3RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
2Apple-M432-2013-physical-Malus-domestica11N/A39168050RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
3Apple-BB-F111N/A71.27RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
4Apple-NC-F111N/A96.46RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
5Apple-NCZFBB-consensus11N/A74.55RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
6Apple-ZF-F111N/A88.97RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4View
Sequence
>RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4 ID=RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4; Name=RosBREEDSNP_SNP_GA_39168050_Lg11_00646_MAF50_389117_exon4; organism=Malus x domestica; type=genetic_marker; length=70bp
GCAGCTCACCTCCCCATTAGGGAAATTTTAGAGAARGAGAAAAAGGTTGG
TTTGCTGGACAGTGTAACAA
Alignments
Feature NameTypeLocationAnalysis
MDC010986.250 contig MDC010986.250:13283..13283. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:42023462..42023462. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation