RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1, RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1
dbSNP IDss475883485
SNP Array ID
480K SNP array for apple:AX-105190865
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1
20K SNP array for apple:RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1
50K SNP array for apple:AX-105190865
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1.probe: ATGAGAATTTTGTCCTTCGTACTAAATTTGTGGTGATGCTTTTTCTTCAA
5' Flanking SequenceCACCCGCCGCTATGAGAATTTTGTCCTTCGTACTAAATTTGTGGTGATGCTTTTTCTTCA A
3' Flanking SequenceGGCTGCTCTGCTGGCGGAGAAGATGGAAGAATCTGAGGCGGGGGAGAAGAACACGGAGTT G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20134N/A44.44RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1View
2Apple-M432-2013-physical-Malus-domestica4N/A18765317RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1View
3Apple-NCZFBB-consensus4N/A44.18RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1View
4Apple-ZF-F14N/A54.98RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1View
Sequence
>RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1 ID=RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1; Name=RosBREEDSNP_SNP_GA_18765317_Lg4_00324_MAF30_490687_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TTCGTACTAAATTTGTGGTGATGCTTTTTCTTCAA[A/G]GGCTGCTCTG
CTGGCGGAGAAGATGGAAGAATCTG
Alignments
Feature NameTypeLocationAnalysis
MDC015347.145 contig MDC015347.145:5718..5718. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr04 chromosome Chr04:25673951..25673951+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation