RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1, RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
Aliasss475876654
rs267609601
c475876654
SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
R_3099492_L1_PA
dbSNP IDss475876654
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
20K SNP array for apple:RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
50K SNP array for apple:RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1.probe: ATTGATTCAGTTATATACCTTTTCCCTGCTTGTTGGCCACTCAATTGAGC
5' Flanking SequenceAAAATGTATACATTGATTCAGTTATATACCTTTTCCCTGCTTGTTGGCCACTCAATTGAG C
3' Flanking SequenceTCTATATCCTTCTGGGAGAGGAAGAAGGCAGGTGGGAGCCTCTTCTGGACAGTGCCTCTC C
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
c475876654c475876654Malus x domesticamarker_locus
ss475876654ss475876654Malus x domesticamarker_locus
RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1 ID=RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1|Name=RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
TACCTTTTCCCTGCTTGTTGGCCACTCAATTGAGC[A/G]TCTATATCCT
TCTGGGAGAGGAAGAAGGCAGGTGG
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F11N/A0.6c475876654View
2apple-RosBREED-sweetness-2015LG1N/A1.5ss475876654View
3Apple-Honeycrisp_Consensus-F11N/A0RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC005454.165 contig MDC005454.165:8253..8253. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr15 chromosome Chr15:9773828..9773828. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15 chromosome Chr15:9773824..9773824. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation