RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1, RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1
dbSNP IDss475877614
SNP Array ID
480K SNP array for apple:AX-105179379
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1
50K SNP array for apple:AX-105179379
TypeSNP
SNP AllelesA/C
Probe 1RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1.probe: GCTATATCTAGAAAGTCCCGAATATGGTAGTGGCTTTTAAGCCAATTTCC
5' Flanking SequenceGCTCGAAACCCGCTATATCTAGAAAGTCCCGAATATGGTAGTGGCTTTTAAGCCAATTTC C
3' Flanking SequenceGTCACCTCCGCCAAGTTTTGTTCCCCCAATGAGGTACAAAAATGTTCATGTCGTCCTAAG C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F13N/A28.4c475877614View
2Apple-RGTxGD-F1-2015RGT_3N/A20.48RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1View
3Apple-Honeycrisp_Consensus-F13N/A22.36RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1View
Sequence
>RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1 ID=RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1; Name=RosBREEDSNP_SNP_AC_10506816_Lg3_00194_MAF30_MDP0000322025_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TCCCGAATATGGTAGTGGCTTTTAAGCCAATTTCC[A/C]GTCACCTCCG
CCAAGTTTTGTTCCCCCAATGAGGT
Alignments
Feature NameTypeLocationAnalysis
MDC016705.70 contig MDC016705.70:2297..2297. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:9558825..9558825+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation