RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1, RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
dbSNP IDss475881012
SNP Array ID
480K SNP array for apple:AX-105213673
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
20K SNP array for apple:RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
50K SNP array for apple:AX-105213673
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1.probe: ATCCTCAGACCAAAGCTAGGGTTTTCCACGAACATCGTGGCCTCCCATTT
5' Flanking SequenceTGTCCACGTGCATCCTCAGACCAAAGCTAGGGTTTTCCACGAACATCGTGGCCTCCCATT T
3' Flanking SequenceCCCGAGACTACTTTGGTTGTCGGGACCATGTTGAAATTGGAAACGCCGAAAGACTCGACT T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pear-PM-F1-PEAR314N/A5.36RosBREED_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
2Apple-M432-201312N/A8.32RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
3Apple-M432-2013-physical-Malus-domestica14N/A6130026RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
4Apple-BB-F114N/A10.24RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
5Apple-NC-F114N/A9.24RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
6Apple-NCZFBB-consensus14N/A10.25RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
7Apple-ZF-F114N/A13.5RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
8Apple-Honeycrisp_Consensus-F114N/A5.6RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
9Pear-PH-CG-2017LG14N/A15.56RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
Sequence
>RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1 ID=RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1; Name=RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
CTAGGGTTTTCCACGAACATCGTGGCCTCCCATTT[G/T]CCCGAGACTA
CTTTGGTTGTCGGGACCATGTTGAA
Alignments
Feature NameTypeLocationAnalysis
MDC011227.253 contig MDC011227.253:20828..20828. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:3449828..3449828+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation