RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1, RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
Aliasc475881012
rs267613957
ss475881012
dbSNP IDss475881012
SNP Array ID
20K SNP array for apple:RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
480K SNP array for apple:RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1.probe: ATCCTCAGACCAAAGCTAGGGTTTTCCACGAACATCGTGGCCTCCCATTT
5' Flanking SequenceTGTCCACGTGCATCCTCAGACCAAAGCTAGGGTTTTCCACGAACATCGTGGCCTCCCATT T
3' Flanking SequenceCCCGAGACTACTTTGGTTGTCGGGACCATGTTGAAATTGGAAACGCCGAAAGACTCGACT T
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1
Publication[view all]
ContactMichela Troggio
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
480K SNP array for appleSNP_chip
20K SNP array for appleSNP_chip
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1-5.595Malus x domesticamarker_locus
RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1-15.56Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1 ID=RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1|Name=RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
CTAGGGTTTTCCACGAACATCGTGGCCTCCCATTT[G/T]CCCGAGACTA
CTTTGGTTGTCGGGACCATGTTGAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201312N/A8.32RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
2Apple-M432-2013-physical-Malus-domestica14N/A6130026RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1View
3Apple-Honeycrisp_Consensus-F114N/A5.6RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1-5.595View
4Pear-PH-CG-2017LG14N/A15.56RosBREEDSNP_SNP_GT_6130026_Lg14_02706_MAF30_1663732_exon1-15.56View
Alignments
Feature NameTypeLocationAnalysis
MDC011227.253 contig MDC011227.253:20828..20828. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:3449828..3449828+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218