RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1, RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1
50K SNP array for apple:	AX-105174675

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

AAGCCAAGGAAATACAAGGATGTAGCTGATGCTGC

3' Flanking Sequence

CAAGCAGCTTTCGAGTCTGCAGCTTATGCAGCAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1 ID=RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1; Name=RosBREEDSNP_SNP_GT_1340208_Lg16_01600_MAF30_1655051_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
AAGCCAAGGAAATACAAGGATGTAGCTGATGCTGCKCAAGCAGCTTTCGA
GTCTGCAGCTTATGCAGCAG

Alignments

Feature Name	Type	Location	Analysis
MDC018695.28	contig	MDC018695.28:13164..13164.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr16	chromosome	Chr16:3161497..3161497.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation