GDsnp02149, GDsnp02149 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp02149
dbSNP IDss475882467
SNP Array ID
IRSC 9K SNP array for apple:GDsnp02149
50K SNP array for apple:AX-105188704
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTGCATCTTTGGATATTTCAGGAGGTAAGTTTCCT
3' Flanking SequenceGTCCAAGTTATGCAAATTTTTTTCATTATTATTT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map14N/A19.7GDsnp02149View
2Pear-PM-F1-PEAR312N/A23.89GDsnp02149View
3Apple-Honeycrisp_Consensus-F114N/A21.48GDsnp02149View
4Pear-PH-CG-2017LG12N/A25.53GDsnp02149View
Sequence
>GDsnp02149 ID=GDsnp02149; Name=GDsnp02149; organism=Malus x domestica; type=genetic_marker; length=70bp
TTGCATCTTTGGATATTTCAGGAGGTAAGTTTCCTYGTCCAAGTTATGCA
AATTTTTTTCATTATTATTT
Alignments
Feature NameTypeLocationAnalysis
MDC015464.144 contig MDC015464.144:6251..6251. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:9199946..9200046+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr14 chromosome Chr14:9199996..9199996. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation